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Outputs

Here we'll describe the outputs generated by the example using longitudinal data. As mentioned before, the function will save figures and data in the output_folder:

.
|____main_analysis
|____planB_by_networks
|____figures_by_network

On these folders, you will see that the files have several key elements on their names:

  • groups: For example, some files will have the group names (age, treatment, etc). Files corresponding to interactions will have the names of the groups that were tested together.
  • p values: The string _p_th_0_05 or _p_th_1_00 indicates that the results correspond to a p value of 0.05 or 1.00, respectively. Notice that the dot is replaced with _. The threshold value is defined in the options.
  • correction for multiple comparisons: The string _corrected_flag_1 and _corrected_flag_0 are used to indicate that the results are corrected or not for multiple comparisons, respectively. Notice the flag is treated as binary: 1 for yes and 0 for no.

main_analysis

This folder contains the result for the main analysis, ie when all the connectivity values are used for the repeated measures anova. Here you will see figures for several posthocs. In addition, this folder contains two subfolders:

  • summary: More relevant figures and tables are saved here
  • posthoc_tables: Files correspond to
    • Marginal means for each group and subgroups. In this example, the corresponding files are:
    • post-hoc tables for each factor and interaction tested in the analysis. In this example, the corresponding files are:

planB_by_networks

figures_by_network